{"id":309,"date":"2021-10-06T13:31:07","date_gmt":"2021-10-06T05:31:07","guid":{"rendered":"https:\/\/cnspub.com\/sites\/309.html"},"modified":"2021-10-06T13:31:07","modified_gmt":"2021-10-06T05:31:07","slug":"ensembl","status":"publish","type":"sites","link":"https:\/\/cnspub.com\/sites\/309.html","title":{"rendered":"Ensembl"},"content":{"rendered":"<div>\n<p>Ensembl\u662f\u4e00\u4e2a\u810a\u690e\u52a8\u7269\u57fa\u56e0\u7ec4\u7684\u57fa\u56e0\u7ec4\u6d4f\u89c8\u5668\uff0c\u652f\u6301\u6bd4\u8f83\u57fa\u56e0\u7ec4\u5b66\u3001\u8fdb\u5316\u3001\u5e8f\u5217\u53d8\u5f02\u548c\u8f6c\u5f55\u8c03\u63a7\u7684\u7814\u7a76\u3002Ensembl\u6ce8\u89e3\u57fa\u56e0\uff0c\u8ba1\u7b97\u591a\u79cd\u6821\u51c6\uff0c\u9884\u6d4b\u8c03\u8282\u529f\u80fd\u548c\u6536\u96c6\u75be\u75c5\u6570\u636e\u3002<br \/>\nEnsembl\u5de5\u5177\u5305\u62ecBLAST, BLAT, BioMart\u548c\u53d8\u5f02\u6548\u5e94\u9884\u6d4b\u5668(VEP)\u4e3a\u6240\u6709\u652f\u6301\u7684\u7269\u79cd\u3002<br \/>\nBioMart\u662f\u5f3a\u5927\u7684RNA \u5728\u7ebfID\u8f6c\u6362\u5de5\u5177\uff1b<br \/>\nBLAST\u662f\u5e8f\u5217\u76f8\u4f3c\u6027\u641c\u7d22\u5de5\u5177\uff0c\u53ef\u7528\u4e8eDNA\u548c\u86cb\u767d\u8d28\u3002BLAT\u662f\u9ed8\u8ba4\u7684\u5de5\u5177\uff0c\u56e0\u4e3a\u5b83\u7684\u901f\u5ea6\u66f4\u5feb\u3002<br \/>\nVariant Effect Predictor: \u5206\u6790\u81ea\u5df1\u7684\u53d8\u4f53\uff0c\u5e76\u9884\u6d4b\u5df2\u77e5\u548c\u672a\u77e5\u53d8\u4f53\u7684\u529f\u80fd\u53d8\u5316\u3002<\/p>\n<p>Ensembl \u7684\u7279\u70b9\uff1a1\u3001\u7269\u79cd\u79cd\u7c7b\u9f50\u5168\u30022\u3001\u63d0\u4f9b\u7269\u79cd\u57fa\u56e0\u7ec4\u5e8f\u5217\u30023\u3001\u6709\u6bd4\u5bf9\u5de5\u5177\uff1aBLAST, BLAT, BioMart\u548c\u53d8\u5f02\u6548\u5e94\u9884\u6d4b\u5668(VEP)\u3002<\/p>\n<p>Ensembl\u63d0\u4f9b\u641c\u7d22\u529f\u80fd\uff0c\u79cd\u7c7b\u5305\u62ecGene, Transcript, Variant, Phenotype, Structural variation, Somatic mutation, Protein families, Gene tree, GenomicAlignment, Translation, Protein domains, Clones and regions, Marker.<\/p>\n<\/div>\n<div>\n<div>\n<p>\u63d0\u4f9b\u7269\u79cd\u6570\u636e\u7684\u5927\u7c7b\uff1a<br \/>\nProtein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.<br \/>\n\u5176\u4e2dFASTA files for genes, cDNAs, ncRNA, proteins GTF or GFF3 files for genes, cDNAs, ncRNA, proteins<\/p>\n<p>\u5176\u4e2dcDNA\u662f\u4e92\u8865DNA\uff0c\u662f\u7531mRNA\u53cd\u8f6c\u5f55\u6765\u7684DNA\uff0c\u4e0d\u5305\u62ecncRNA.\u53cc\u94feDNA\u7f29\u5199\u662fdsDNA\uff0cncRNA\u8868\u793a\u975e\u7f16\u7801RNA.<br \/>\nCDS\u662f\u7f16\u7801\u5e8f\u5217\uff08Coding sequence\uff09\u7684\u7f29\u5199\u3002DNA\u8f6c\u5f55\u6210mRNA\uff0cmRNA\u7ecf\u526a\u63a5\u7b49\u52a0\u5de5\u540e\u7ffb\u8bd1\u51fa\u86cb\u767d\u8d28\uff0c\u6240\u8c13CDS\u5c31\u662f\u4e0e\u86cb\u767d\u8d28\u5e8f\u5217\u4e00 \u4e00\u5bf9\u5e94\u7684DNA\u5e8f\u5217<\/p>\n<p>\u4ee5alt\u7ed3\u5c3e\u7684\u53c2\u8003\u57fa\u56e0\u7ec4\u6587\u4ef6\uff0c\u8fd9\u4e2a\u6587\u4ef6\u7684alt\u4ee3\u8868\uff1aAlternate loci\uff0c\u4e0d\u540c\u7684\u5355\u500d\u4f53\u578b\uff0c\u91cc\u9762\u6709\u4e0d\u540c\u7684HLA\u5e8f\u5217\uff0c\u57fa\u56e0\u5728\u4e00\u6761\u67d3\u8272\u4f53\u4e0a\u7684\u7ec4\u5408\u79f0\u5355\u5143\u578b(haplotype \uff0c\u53c8\u79f0\u5355\u500d\u578b)<\/p>\n<\/div>\n<p>\u4f5c\u8005\uff1a\u82b1\u8272\u5306\u5306<br \/>\n\u94fe\u63a5\uff1ahttps:\/\/www.jianshu.com\/p\/ab947d540ebe<br \/>\n\u6765\u6e90\uff1a\u7b80\u4e66<br \/>\n\u8457\u4f5c\u6743\u5f52\u4f5c\u8005\u6240\u6709\u3002\u5546\u4e1a\u8f6c\u8f7d\u8bf7\u8054\u7cfb\u4f5c\u8005\u83b7\u5f97\u6388\u6743\uff0c\u975e\u5546\u4e1a\u8f6c\u8f7d\u8bf7\u6ce8\u660e\u51fa\u5904\u3002<\/p><\/div>\n","protected":false},"author":1,"comment_status":"open","ping_status":"closed","template":"","meta":{"_monsterinsights_skip_tracking":false},"content_visibility":[715],"sitetag":[],"favorites":[373],"class_list":["post-309","sites","type-sites","status-publish","hentry","favorites-bio-database"],"_links":{"self":[{"href":"https:\/\/cnspub.com\/index.php\/wp-json\/wp\/v2\/sites\/309","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/cnspub.com\/index.php\/wp-json\/wp\/v2\/sites"}],"about":[{"href":"https:\/\/cnspub.com\/index.php\/wp-json\/wp\/v2\/types\/sites"}],"author":[{"embeddable":true,"href":"https:\/\/cnspub.com\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/cnspub.com\/index.php\/wp-json\/wp\/v2\/comments?post=309"}],"wp:attachment":[{"href":"https:\/\/cnspub.com\/index.php\/wp-json\/wp\/v2\/media?parent=309"}],"wp:term":[{"taxonomy":"content_visibility","embeddable":true,"href":"https:\/\/cnspub.com\/index.php\/wp-json\/wp\/v2\/content_visibility?post=309"},{"taxonomy":"sitetag","embeddable":true,"href":"https:\/\/cnspub.com\/index.php\/wp-json\/wp\/v2\/sitetag?post=309"},{"taxonomy":"favorites","embeddable":true,"href":"https:\/\/cnspub.com\/index.php\/wp-json\/wp\/v2\/favorites?post=309"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}